Digital technologies for Arts Faculty researchers


researchers trying out digital technologies

Recently, the Library Research Support team hosted two drop-in events to showcase some of the digital technologies that have potential for use by researchers in the Arts Faculty.  We wanted to explore how researchers might apply the different technologies to their own projects and to discover which they envisaged as being most useful, in order to inform planning for future developments in our Library service provision.

One of the technologies displayed was 3D digitisation.  3D digitisation can be achieved either by scanning an object, or by photogrammetry: a technique where many photographs are taken of an object and complied into a 3D representation by specialist software.  The 3D representation may then be viewed on a screen, where it can be rotated to show all angles, or viewed in virtual reality, or printed in 3D.

A demonstration of 3D printing was in progress during the event and visitors saw and handled a variety of printed objects. Printed 3D objects allow tactile engagement with the subjects of research and may be used for study in order to preserve fragile originals, for experimentation, to demonstrate relative sizes, as models to cast to produce a facsimile, or for engagement or impact activities.

The DIY computing table featured a Raspberry Pi (a single-board microcomputer) and an Arduino (a programmable circuit board, or microcontroller, with the software to program it).  These can be used for a variety of activities, including data visualization, automation, or controlling other devices, such as the Arduino-controlled drone also on display.   There were examples of connectors and boards on which a microcomputer and components could be mounted, as well as a humidity sensor and a barometer, as examples of sensors that could be connected to a microcomputer.

Visitors to the event saw two examples of 360-degree video cameras, which may be used to record, for instance, performances, events, interiors or landscapes.  360-degree footage can be shown through a virtual reality headset, or alternatively on computers or mobile devices. Such videos may form research data or be a final output of research. 

Our virtual reality headsets proved to be the most popular draw of the events.  Visitors experienced VR representations of historic sites and interiors and watched 360-degree videos through the headsets.  Great excitement (not to mention a touch of motion sickness) was apparent in those who travelled to Everest Base Camp in VR!  VR may be used in research to study social situations, to explore environments, to watch performances, to view exhibitions or in training applications.  Some of the researchers at the event talked to us about how reconstructing historical interiors would be useful in their work and there were also conversations exploring potential educational uses of VR. 

As part of their visit to the event, researchers were asked to complete a survey to help us gauge interest in the different digital technologies and we will use this feedback to inform future planning.  If you did not attend the event, but might be interested in using digital technologies in your research, we would be glad to hear your views via our survey.

Look out for a similar event for Social Scientists coming soon.

 

Bristol joins Modern Languages Open

The University of Bristol has recently taken out membership of Modern Languages Open, https://www.modernlanguagesopen.org/, an open access platform from the University of Liverpool Press, publishing peer-reviewed research from across the modern languages, with content updated on a continuous basis.

Articles will be open access immediately on publication (gold open access) for a comparatively small charge which, for RCUK-funded Bristol authors, will be covered by our membership.  Other authors may request a waiver of the fees.

MLO offers a welcome alternative non-commercial model of open access funding.  It is produced in partnership with the University of Liverpool Library and is partly supported by the Liverpool University Press Authors Fund, with the result that gold open access publishing can be offered to authors at a more manageable cost than is charged by most mainstream academic publishers.

Bristol also supports the not-for-profit open access publisher, Open Library of the Humanities, which is funded by an international consortium of libraries and has no author-facing open access charges.

Library Carpentry Bristol

Bristol Research Data Service recently hosted a Library Carpentry workshop in collaboration with colleagues at the University of the West of England and the University of Bath – read on to find out what it was about and what’s happening next.

What is Library Carpentry?

Library Carpentry is a set of software skills lessons created by librarians, for librarians, covering a variety of subjects including Git, SQL, Python, and using the Unix command line. The course materials are developed and maintained by volunteers, and are intended to be taught by one or more instructors (also volunteers). Each lesson is also suitable for self-study. All the course materials are freely available online under a permissive use licence (CC-BY) and can be reused and remixed if needed.

Library Carpentry is an offshoot of Software Carpentry and Data Carpentry (the latter are aimed at academic researchers) and follows the same basic lesson structure – short introductions to key concepts followed by examples to work through to solidify learning. The tools and software packages taught are typically open source to maximise opportunity of use.

Why Bristol?

Naked self-interest! Bristol Research Data Service staff were keen to learn more about data manipulation techniques, and an informal poll of the GW4 Alliance Data Services Working Group showed that there was interest in other local institutions as well. We ended up advertising the event to all GW4 and AULIC institutions.

Event specifics

We asked potential attendees which modules they would most be interested in, and on that basis selected the Introduction to data and OpenRefine lessons. Library Carpentry has a very active Gitter group, so after submitting a plea there and contacting the organisers of past workshops (thank you to Tabitha Witherick!) we had two instructors volunteer: Dave Rowe (introduction to data) and Owen Stephens (OpenRefine).

We also needed helpers: people to assist on the day with general troubleshooting (for example, network connection issues). We had volunteers from both library staff and IT Services across Bristol, Bath and UWE. It’s safe to say that the workshop would not have run anywhere near as effectively as it did without them, so thank you very much to all the helpers – and of course, our instructors!

Over seven hours we covered the two chosen modules, with time for questions, general discussion and working through examples using library-related data.

Outcomes and follow-up

Feedback from attendees has so far been excellent, with several people indicating that they’ll be using OpenRefine for specific tasks the near future, and even teaching colleagues how to use it. At Bristol we had several requests for a second workshop from people unable to attend the first one; whilst another formal workshop might not be possible, we’re looking into a ‘flipped classroom’ or collaborative learning approach of short 1-2 hour sessions to pass our learning on to other colleagues and keep our skills fresh.

All in all, it was a very useful day, and we’d highly recommend attending or hosting a Library Carpentry workshop if you have a chance.

 

Unlocking Open Access – Kopernio

Kopernio is an extension for your internet browser that quickly tells you if you have access to a version of the journal article that you are looking at. It detects when you are looking at an article’s page and, if you have access through either the library’s subscriptions or through an Open Access version, it will provide a link to the document.

The extension also keeps a record of articles you downloaded so you can find them again easily and can export a list of references to a .bib file for use with BibTeX.

The video gives a good indication of how the extension works. Why not try it out next time you’re looking for journal articles?

You can find Kopernio at https://kopernio.com/

The extension will work in Chrome or Firefox.

Edit: This extension was previously known as Canary Haz. We have updated the information here to reflect the new name and website.

Unlocking Open Access – Open Access DOIs

You’ve seen DOI numbers before. But did you know that you can use them to link to Open Access versions of articles?

DOI stands for Digital Object Identifier. They are unique identifying numbers for online publications, such as electronic journal articles. A DOI will look something like this: 10.1093/mind/fzr010

You can use a DOI to find a paper by pasting the DOI into the following format: https://doi.org/XXXXXXX.

Using the DOI from above, we’d get https://doi.org/10.1093/mind/fzr010

But, the above journal article is on a publisher’s website which hides the full text behind a paywall. You may have access thanks to the subscriptions provided by library services. But if not, you can try using Open Access DOIs to find an open access version.

The format for OADOIs is: https://oadoi.org/XXXXXXX

So with our example we would get: https://oadoi.org/10.1093/mind/fzr010

This looks for any Open Access versions and, if it finds any, it links you to one of them, rather than the publisher’s site.

This is a good trick for finding an Open Access version of an article you already know. It can also be a good way to link your readers to an open version of your work, ensuring they can read it.

Unlocking Open Access – Unpaywall

We talk a lot about uploading your articles to Pure so other researchers can benefit from Open Access. But we rarely talk about how you can use Open Access to benefit your own research. In this series of blog posts, we’ll show you some simple ways to find Open Access articles. First up: Unpaywall.

Unpaywall

A screenshot of a paywalled article, with the open padlock logo of Unpaywall on the right hand side of the page
The open padlock icon on the right hand side of the page shows that an open access version is available. Clicking the icon will take you to the article.

You’re searching for useful papers for your research. But the library can’t afford a subscription to all the journals you need. Papers hidden behind paywalls are a constant frustration. You could ask the library to get copies for you, but you’re on a tight schedule. You’d rather get that paper now.

Unpaywall is the solution. This browser extension adds an icon to your screen that lets you know if an Open Access version of the paper you’re trying to view is available. Click that and you’ll be reading the full text in seconds.

You can add the extension to Google Chrome or Firefox, even on university computers. Once you do, it’s always on and checking to see if it can provide a link to an Open Access version. If so, it’ll add an unobtrusive open padlock icon to the right of the screen, which will take you to the full text.

This is the easiest way we’ve seen to add Open Access to your research strategy. You can add Unpaywall to your browser here: http://unpaywall.org/

Twelve days of data

We’re all in the festive spirit here at the Research Data Service, and so Data Claus (pictured below) set us elves the challenge of finding data relating to the Twelve days of Christmas.

There were lively debates about what could be justified as the right data for each day, and lots of imaginative searching. Admittedly, some of the data is a little left-field (leaping Lords were an issue) but, we managed it.

If you want to know about the gold content in rings, would like to listen to songbirds or are interested in breastfeeding rates in the UK eight weeks post-partum, follow us on Twitter and enjoy our #12daysofdata.

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Thesis data in Russell Group universities

Guest blog post from the University of Bristol Research Data Service (data.bris.ac.uk), describing a recent investigation into retention of thesis data in Russell Group universities.

Thesis data at the University of Bristol

The University of Bristol research data repository, data.bris, has been running since 2014, and has been core funded since 2015. Use of the repository is becoming well-integrated into the research cycle, but whilst we accept deposits from postgraduate researchers (PGRs) as well as academics, the vast majority of these are data underpinning journal articles. Increasing the intake of data relating to other types of publications is an obvious next step.

Currently, Bristol PGRs may only deposit a hardbound copy of their thesis with the University Library; supporting data may be attached in physical storage media, but there is no requirement to make this available (in any format) as part of the final deposit process. Similarly, the University’s Research Data Management and Open Data Policy applies to PGRs and research staff, but doesn’t specifically address retention of thesis data. An investigation into how electronic final deposit of theses may be managed is underway, and we wanted to both support the wider investigation and increase use of the repository by extending the data.bris remit to data underpinning PhD theses.

The question

We wanted to understand how peer institutions across the UK handled thesis data, in order to see whether we could adopt an existing policy and/or infrastructure model. I was tasked with finding out whether relevant institutions had policies on thesis data retention, and if so, how this was managed and enforced. For brevity, I focussed my query on Russell Group universities.

Existing information

Some work had already been done in this area – the Unlocking Thesis Data (UTD) project [1] phase 1 survey included a question on depositing thesis data:
Q4. “If supplementary data files relating to the thesis are also deposited, where are these held?”
The survey results included responses from thirteen Russell Group universities [2], including Bristol, which have been summarised in the infographic [Figure 1]. Most respondents indicated that thesis data could be deposited alongside the thesis itself, with some institutions having multiple storage locations both linked and unlinked to the thesis record. At the time of the survey, no Bristol PGRs had attempted to deposit thesis data; we now have a number of PGR data deposits in the repository but as noted above, these are linked to journal articles rather than theses. Whilst UTD was a very useful starting point, it focussed largely on the thesis as an information object, rather that the data underpinning it. More information was needed.

Infographic summarising thesis data retention in Russell Group universities, 2015-2016
Figure 1: Thesis data in Russell Group universities, 2015-2016

 

New information

Twenty of twenty-three other Russell Group (RG) universities responded to an informal email enquiry on their thesis data deposit policies. Their responses are summarised in the infographic [Figure 1] and are discussed below. Anonymised aggregated results are shown in [Figure 2].

Table containing 2016 responses to enquiry on retention of thesis data in Russell Group universities
Figure 2: Thesis data retention in Russell Group universities – 2016 responses

Of the eleven universities with an explicit or implicit policy on thesis data, five had optional deposit of thesis data, and six mandated deposit (thesis data ‘should’, ‘must’ or ‘is expected to’ be retained in a suitable repository for a minimum time). However, the majority of universities with a mandatory retention policy reported that the policies were unenforced and compliance was very low, and/or that there was no infrastructure for retention in an institutional repository. Seven universities had policies on management of thesis data, either as an explicit part of their general RDM policy, their good research practice policy, or a separate thesis submission policy. Four universities indicated that their general research data policies were intended to cover thesis data although this was not explicitly mentioned in the policy text. Nine had no policy on thesis data.

Conclusion

There is little uniformity across RG institutions in their approach to thesis data retention. In particular, there is a discordance between policy and the infrastructure required to support it. When both exist, only a minority of institutions report that the policy is enforced, meaning that in this instance there isn’t a great deal of sector knowledge to draw upon! However, many institutions reported that they were, like Bristol, actively considering the topic, so it seems likely that this situation will change over the next year or two.

Next steps

As noted previously, we are currently investigating ways to facilitate electronic deposit of theses at Bristol. Alongside this, we’re also looking to pilot a process for depositing thesis data and are planning to assess requirements for this based on the input of departments participating in the trial. Both projects are in their infancy at the moment, but I hope to provide further updates as they progress.

Acknowledgements

With thanks to colleagues at responding institutions and the Unlocking Thesis Data project for supporting information.

References

[1] Grace, Stephen and Whitton, Michael and Gould, Sara and Kotarski, Rachael: Unlocking Thesis Data phase one. DOI: 10.15123/PROJECT.15

[2] Cardiff University, Durham University, King’s College London, London School of Economics and Political Science, University of Birmingham, University of Bristol, University of Cambridge, University of Edinburgh, University of Liverpool, Newcastle University, University of Oxford, University of Southampton, University of Glasgow

Victor Frankenstein’s Data Management Plan – a Halloween special

Guest blog post from the University of Bristol Research Data Service (data.bris.ac.uk), featuring extracts from Mary Shelley’s Frankenstein.

What may be the first ever Data Management Plan has been discovered by archivists at the University of Ingolstadt.

image

The fascinating document describes the applicant’s intention to make exciting advances in the fields of biochemistry and human physiology. Archivist Lizzie Lavenza told us: “We don’t know whether or not Victor successfully completed his project but we’re grateful that he’s left us with such a unique and invaluable historical document.”


DMP

Click for larger image